About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01017326.1_579_697_F

Intron Information:

Intron Rank:
151405
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
579 - 697
Intron Length:
119

Sequence Information:

Terminal Dinucleotides:
GT-AA
5'SS Sequence:
CAA|GTGTGGGGG
5'SS Class:
major
3'SS Sequence:
GCGGGACCTTCAA|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CCAAAAT
U12 Branch Point Sequence:
GGACCCCTAAGT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
64.4
0.34
1
50.2
40.7
Major BPS
48.3
-0.1
1.2
53.2
37.3
Major PPT
35.7
-0.8
3.1
43.7
42.6
Minor 5ss
31
-2.2
3.5
36.6
42.3
Minor BPS
48.3
-0
2
65.33
44

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000031256
Chromosome:
PEDO01017326.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047820
21 - 1163
1143