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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01017333.1_1542_1921_R

Intron Information:

Intron Rank:
129442
Intron Class:
major
Intron Phase:
Intron Coordinates:
1542 - 1921
Intron Length:
380

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGGTCAC
5'SS Class:
strong_major
3'SS Sequence:
TTATCTGCTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
ATTTCATTATCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.4
0.72
1
68.4
38.7
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
80.1
0.68
0.9
77.6
36.5
Minor 5ss
27.7
-2.6
3
34.2
42
Minor BPS
67.8
0.64
1.8
87.99
36.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016843
Chromosome:
PEDO01017333.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020141
489 - 5032
4544