Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01017345.1_535_609_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

535 - 609

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAGGGAC

5'SS Class:

strong_major

3'SS Sequence:

CCCATCCCCATAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGCTGAC

U12 Branch Point Sequence:

CGCTGCTGACCC

Flanking Amino Acid:

ESTVGFVLSYRGRERCRHFV

Intron Amino Acid Position:

469

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.2

0.83

0.9

72.6

32.3

Major BPS

66.3

0.4

1.1

41.8

Major PPT

63.7

0.31

0.8

27.2

Minor 5ss

24.1

-3

3.3

43.4

Minor BPS

43.7

-0.5

2.1

51.35

45.6

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000025783

Chromosome:

PEDO01017345.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000031004

292 - 2328

2037