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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01017350.1_1812_1924_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1812 - 1924
Intron Length:
113

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTGAGTATG
5'SS Class:
major
3'SS Sequence:
GCTGCCTCCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTGAC
U12 Branch Point Sequence:
TGCTCCTGACGC
Flanking Amino Acid:
LVCGTEVWAGYPPETPGNLT
Intron Amino Acid Position:
118

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72
0.52
1.1
71.2
40.3
Major BPS
68.9
0.47
1
59.2
39.1
Major PPT
67.9
0.4
0.9
57.8
38.5
Minor 5ss
36.8
-1.5
2.9
52.3
44.3
Minor BPS
47.6
-0.2
2
59.68
45.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027831
Chromosome:
PEDO01017350.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042834
21 - 6808
6788
ENSAPLT00000042651
1216 - 6808
5593
ENSAPLT00000040650
21 - 6808
6788
ENSAPLT00000026423
532 - 6808
6277