About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01017350.1_3746_4085_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3746 - 4085
Intron Length:
340

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTAAGTGTC
5'SS Class:
strong_major
3'SS Sequence:
GCTCTCCCCACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCCCAT
U12 Branch Point Sequence:
CTCTCCCCACAG
Flanking Amino Acid:
PPFMYTTPEAAPAAAPDVWR
Intron Amino Acid Position:
309

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
80
33.6
Major BPS
59.7
0.24
1.3
68.6
38.9
Major PPT
72.1
0.5
0.8
64.9
30.8
Minor 5ss
37.7
-1.4
3.3
53.4
43.8
Minor BPS
40.1
-0.8
2.1
45.33
46.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027831
Chromosome:
PEDO01017350.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042834
21 - 6808
6788
ENSAPLT00000042651
1216 - 6808
5593
ENSAPLT00000040650
21 - 6808
6788
ENSAPLT00000026423
532 - 6808
6277