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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01017362.1_659_841_R

Intron Information:

Intron Rank:
145957
Intron Class:
major
Intron Phase:
Intron Coordinates:
659 - 841
Intron Length:
183

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
GCTTTGTTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTCTAAT
U12 Branch Point Sequence:
CCATGTCTAATG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
77.3
32.8
Major BPS
76.7
0.66
1.2
77.9
34.9
Major PPT
82.4
0.73
0.9
76.3
37.7
Minor 5ss
33.3
-1.9
2.9
41.3
44.8
Minor BPS
43
-0.6
2
43.84
42.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025933
Chromosome:
PEDO01017362.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040244
21 - 1475
1455