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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01017378.1_452_915_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
452 - 915
Intron Length:
464

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTGAGTATG
5'SS Class:
strong_major
3'SS Sequence:
CTGCTCCTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTCAC
U12 Branch Point Sequence:
CTTCTGCTACCT
Flanking Amino Acid:
HEMAIQVQAEYPVVFQVHTG
Intron Amino Acid Position:
130

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.2
0.74
1
79.9
34.9
Major BPS
69.8
0.49
1.1
71.3
36.7
Major PPT
79.3
0.66
0.8
73
31.8
Minor 5ss
36.3
-1.5
2.9
47
41.7
Minor BPS
41.8
-0.5
2.4
65.17
45.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022059
Chromosome:
PEDO01017378.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043261
139 - 1669
1531