About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01017403.1_1516_1687_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1516 - 1687
Intron Length:
172

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGA|GTGCGTACC
5'SS Class:
major
3'SS Sequence:
TCCCACCCCACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCCCAC
U12 Branch Point Sequence:
TGCCCTCCCACC
Flanking Amino Acid:
GRAASGILDHDLVFWFGDLN
Intron Amino Acid Position:
168

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
62.8
0.3
1.1
59.7
39.5
Major BPS
50
0
1.2
61.8
35.9
Major PPT
68.3
0.41
0.8
60.8
29
Minor 5ss
31.8
-2.1
2.8
34
34.9
Minor BPS
40
-0.8
2.1
49.43
40.7

Associated Gene:

Gene:
INPP5J
Ensembl Gene ID:
ENSAPLG00000012501
Chromosome:
PEDO01017403.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013012
16 - 3225
3210