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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01017410.1_556_1389_F

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
556 - 1389
Intron Length:
834

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
GCG|GCTGCTGCG
5'SS Class:
weak_major
3'SS Sequence:
GATGGATGCCCAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CCCTGAT
U12 Branch Point Sequence:
TTCCCCCTCACA
Flanking Amino Acid:
RLSAHNSSMGRTPESRSSCR
Intron Amino Acid Position:
77

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
50
0
1.5
51.7
44.2
Major BPS
66.4
0.41
1.1
56.9
40.5
Major PPT
54.2
0.1
1.1
43.2
46.4
Minor 5ss
23.7
-3
4
33.8
41.7
Minor BPS
51.4
0.04
2.1
69.47
42.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018355
Chromosome:
PEDO01017410.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024081
245 - 1486
1242