Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01017412.1_2611_2685_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

2611 - 2685

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATA|GTAAAACAA

5'SS Class:

major

3'SS Sequence:

GGTGTAAAGAAAG|A

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

AAATTAA

U12 Branch Point Sequence:

GAGAAATTAAGG

Flanking Amino Acid:

KVAYHMQCGNKELYTYGIKE

Intron Amino Acid Position:

221

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

62.7

0.3

1.1

56.6

36.1

Major BPS

58.9

0.22

50.1

34.6

Major PPT

45.9

-0.2

1.2

38.9

42.2

Minor 5ss

32.5

-2

3.2

40.3

40.9

Minor BPS

40.9

-0.8

40.69

42.5

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000026955

Chromosome:

PEDO01017412.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000034081

482 - 2753

2272