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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01017482.1_4078_4372_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4078 - 4372
Intron Length:
295

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGAGA
5'SS Class:
strong_major
3'SS Sequence:
CTTTCATTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
ATCACTTTCATT
Flanking Amino Acid:
TNHYLATLYKNTSVLENHHW
Intron Amino Acid Position:
75

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.8
78.7
37.2
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
85.7
0.8
0.8
77.3
35.9
Minor 5ss
31.6
-2.1
3.1
40
45.7
Minor BPS
53.2
0.18
1.8
70.38
41.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019036
Chromosome:
PEDO01017482.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033826
3856 - 6262
2407