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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01017486.1_1825_2218_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
1825 - 2218
Intron Length:
394

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACGGTGC
5'SS Class:
major
3'SS Sequence:
CCTTTGTGTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTCAT
U12 Branch Point Sequence:
TACTGCCCAACT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
65
42.1
Major BPS
78.3
0.7
0.8
77.7
26.1
Major PPT
77
0.61
1
72
38
Minor 5ss
36
-1.6
3.5
50.3
46.3
Minor BPS
47.1
-0.1
2.3
70.3
46

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004232
Chromosome:
PEDO01017486.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004330
164 - 2993
2830