About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01017505.1_14366_14488_F


Intron Information:

Intron Rank:
2

Intron Class:
major

Intron Phase:
2

Intron Coordinates:
14366 - 14488

Intron Length:
123

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
CGC|GTGAGTATC

5'SS Class:
major

3'SS Sequence:
CGTGTCCTCGCAG|G

3'SS Class:
major_PPT

U2 Branch Point Sequence:
GGACCAT

U12 Branch Point Sequence:
CCTGGCTCCACG

Flanking Amino Acid:
LASVLKDVCDAWSLPNAEHY

Intron Amino Acid Position:
40

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
67.8
0.42
1.3
72.2
39.5

Major BPS
43.1
-0.4
1.5
46.5
46.6

Major PPT
72.3
0.5
0.9
65.4
36.1

Minor 5ss
35.8
-1.6
2.8
41.3
38.3

Minor BPS
39.1
-1
2.3
42.41
48.7

Associated Gene:

Gene:
ELMO3

Ensembl Gene ID:

Chromosome:
PEDO01017505.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

12708 - 22173
9466

13368 - 22173
8806

14164 - 22173
8010