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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01017505.1_1723_1845_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1723 - 1845
Intron Length:
123

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
ATCCTTCCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AGCTGAC
U12 Branch Point Sequence:
TCCTTCCCACAG
Flanking Amino Acid:
AERRYVVKLKASVLEWMQRT
Intron Amino Acid Position:
402

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92
0.99
0.7
82.8
23.2
Major BPS
57.5
0.19
1.1
48.8
38.1
Major PPT
75
0.56
0.8
68.9
31
Minor 5ss
26.6
-2.7
3
30.8
43.1
Minor BPS
38
-1
2
40.66
43.5

Associated Gene:

Gene:
EXOC3L1
Ensembl Gene ID:
ENSAPLG00000005428
Chromosome:
PEDO01017505.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005641
21 - 4215
4195
ENSAPLT00000024006
21 - 4215
4195
ENSAPLT00000019946
655 - 6337
5683