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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01017505.1_1723_1857_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1723 - 1857
Intron Length:
135

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAAACTC
5'SS Class:
major
3'SS Sequence:
ATCCTTCCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AGCTGAC
U12 Branch Point Sequence:
TCCTTCCCACAG
Flanking Amino Acid:
LVDQAERRYVASVLEWMQRT
Intron Amino Acid Position:
443

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.3
0.45
1
61
37.7
Major BPS
57.5
0.19
1.1
48.8
38.1
Major PPT
75
0.56
0.8
68.9
31
Minor 5ss
30.6
-2.2
3.3
39
40.7
Minor BPS
38
-1
2
40.66
43.5

Associated Gene:

Gene:
EXOC3L1
Ensembl Gene ID:
ENSAPLG00000005428
Chromosome:
PEDO01017505.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033788
655 - 6642
5988