Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01017505.1_17990_18614_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

17990 - 18614

Intron Length:

625

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGGGGGAG

5'SS Class:

major

3'SS Sequence:

TGTGTCTTTCCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AGTTGAA

U12 Branch Point Sequence:

CAAAGTTGAATC

Flanking Amino Acid:

MRTSMDPYSQNNSNPAEDLR

Intron Amino Acid Position:

307

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

74.3

0.57

40.8

Major BPS

63.2

0.33

1.1

55.1

42.1

Major PPT

82.3

0.73

0.9

73.4

41.9

Minor 5ss

21.7

-3.3

3.4

27.2

44.5

Minor BPS

43.1

-0.5

1.8

45.69

36.9

Associated Gene:

Gene:

ELMO3

Ensembl Gene ID:

ENSAPLG00000005842

Chromosome:

PEDO01017505.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000006115

14164 - 22173

8010