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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01017505.1_1964_2105_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1964 - 2105
Intron Length:
142

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCAGCGGC
5'SS Class:
major
3'SS Sequence:
CTCTGCCCTCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTCCCAC
U12 Branch Point Sequence:
CCCGTCCCACCT
Flanking Amino Acid:
LLKWVLHVYHSSEMMGHPDL
Intron Amino Acid Position:
362

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.6
0.53
1.3
63.6
42.3
Major BPS
47.8
-0.1
1.4
58.1
40.4
Major PPT
75.6
0.58
0.8
65.7
36.1
Minor 5ss
32.1
-2
3.2
42
44.8
Minor BPS
37.5
-0.8
2
47.26
45.5

Associated Gene:

Gene:
EXOC3L1
Ensembl Gene ID:
ENSAPLG00000005428
Chromosome:
PEDO01017505.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024006
21 - 4215
4195
ENSAPLT00000019946
655 - 6337
5683
ENSAPLT00000005641
21 - 4215
4195
ENSAPLT00000033788
655 - 6642
5988