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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01017505.1_2767_2911_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2767 - 2911
Intron Length:
145

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGCAC
5'SS Class:
strong_major
3'SS Sequence:
CCCTCTCCCGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTCAG
U12 Branch Point Sequence:
CTGCACTCAGTC
Flanking Amino Acid:
VVQVLPQLFSVHEVFSHTLQ
Intron Amino Acid Position:
142

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.3
0.9
0.9
73
38.2
Major BPS
50.8
0.02
1.5
61
37.5
Major PPT
74.1
0.54
0.7
68.4
25.2
Minor 5ss
31
-2.2
3.3
41
45.6
Minor BPS
42.6
-0.5
1.8
49.07
41.2

Associated Gene:

Gene:
EXOC3L1
Ensembl Gene ID:
ENSAPLG00000005428
Chromosome:
PEDO01017505.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024006
21 - 4215
4195
ENSAPLT00000019946
655 - 6337
5683
ENSAPLT00000005641
21 - 4215
4195
ENSAPLT00000033788
655 - 6642
5988
ENSAPLT00000029581
655 - 3779
3125