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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01017505.1_2994_3104_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2994 - 3104
Intron Length:
111

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTGAGCGCG
5'SS Class:
major
3'SS Sequence:
CGACCGCTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGGGCAC
U12 Branch Point Sequence:
CACTGCTGGACT
Flanking Amino Acid:
KSTVQSYLEGDLQQMRALMA
Intron Amino Acid Position:
78

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.4
0.55
1.1
56.7
42.7
Major BPS
44
-0.3
1.5
48.8
46.3
Major PPT
65.3
0.34
1
53.8
41.2
Minor 5ss
30.8
-2.2
3.2
30.6
42.7
Minor BPS
48.3
-0
2
64.46
46

Associated Gene:

Gene:
EXOC3L1
Ensembl Gene ID:
ENSAPLG00000005428
Chromosome:
PEDO01017505.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024006
21 - 4215
4195