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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01017505.1_3132_3659_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3132 - 3659
Intron Length:
528

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGGTATG
5'SS Class:
strong_major
3'SS Sequence:
TTCTGCTCCCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AGAGCAT
U12 Branch Point Sequence:
GCATCCCCACTG
Flanking Amino Acid:
RNSSIQSRLKSTVQSYLEGV
Intron Amino Acid Position:
69

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.3
0.79
0.9
77.8
38.7
Major BPS
45.8
-0.2
1.4
51.5
43.9
Major PPT
77.5
0.62
0.8
69.3
36.9
Minor 5ss
32.5
-2
3.1
41.1
45.5
Minor BPS
40.6
-0.8
2
41.93
42.8

Associated Gene:

Gene:
EXOC3L1
Ensembl Gene ID:
ENSAPLG00000005428
Chromosome:
PEDO01017505.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024006
21 - 4215
4195
ENSAPLT00000019946
655 - 6337
5683
ENSAPLT00000005641
21 - 4215
4195
ENSAPLT00000033788
655 - 6642
5988
ENSAPLT00000029581
655 - 3779
3125