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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01017586.1_13298_13695_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
13298 - 13695
Intron Length:
398

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
GGA|GCAGGAAGC
5'SS Class:
weak_major
3'SS Sequence:
CCTCTCCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTCTGAC
U12 Branch Point Sequence:
TGCTGTCTGACG
Flanking Amino Acid:
GSHLGTAGGAWTASSVAME
Intron Amino Acid Position:
10

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
58.6
0.2
1.3
61.2
40
Major BPS
63.7
0.34
1.2
57
41.8
Major PPT
75
0.56
0.7
69
24.7
Minor 5ss
23.4
-3.1
3.9
30.4
36.7
Minor BPS
44.5
-0.5
2.1
51.58
43.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000031174
Chromosome:
PEDO01017586.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046606
5763 - 13722
7960