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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01017586.1_6413_9423_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6413 - 9423
Intron Length:
3011

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGATCT
5'SS Class:
strong_major
3'SS Sequence:
CCTTGCCCTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTAAC
U12 Branch Point Sequence:
TCTTCCTAACCC
Flanking Amino Acid:
EMKELEARQQDVLDRELEER
Intron Amino Acid Position:
77

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.4
0.76
1
75.1
35.8
Major BPS
72
0.55
1
71.8
31.4
Major PPT
76.7
0.6
0.8
69.5
31.2
Minor 5ss
39.2
-1.2
3.4
56.9
47.4
Minor BPS
60.5
0.31
2
73.88
43.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000031174
Chromosome:
PEDO01017586.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046606
5763 - 13722
7960