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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01017600.1_10595_11854_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10595 - 11854
Intron Length:
1260

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGCAGC
5'SS Class:
major
3'SS Sequence:
AAATCCATTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
TTGAGTTTAATT
Flanking Amino Acid:
GMDKLIVDDRGKATISNDGA
Intron Amino Acid Position:
54

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
1
67.1
44.6
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
67.9
0.4
1
59.3
40.6
Minor 5ss
39.3
-1.2
2.8
43.9
43.7
Minor BPS
59.3
0.37
1.8
75.99
41.5

Associated Gene:

Gene:
CCT7
Ensembl Gene ID:
ENSAPLG00000014343
Chromosome:
PEDO01017600.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014994
1594 - 13386
11793