Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01017621.1_581_1129_F

Intron Information:

Intron Rank:

123697

Intron Class:

major

Intron Phase:

Intron Coordinates:

581 - 1129

Intron Length:

549

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTG|GTGAGAGAA

5'SS Class:

major

3'SS Sequence:

TGTCGCTGCACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTTTTAC

U12 Branch Point Sequence:

TAAGCTTTTACT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

79.2

0.69

0.9

69.2

30.2

Major BPS

74.2

0.6

39.4

Major PPT

0.38

60.5

40.4

Minor 5ss

24.4

-2.9

3.1

25.9

38.1

Minor BPS

58.1

0.34

1.7

73.6

43.3

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000016696

Chromosome:

PEDO01017621.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000024364

298 - 2342

2045