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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01017650.1_5862_6029_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5862 - 6029
Intron Length:
168

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGAGCC
5'SS Class:
strong_major
3'SS Sequence:
CTTTCCTCCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTAAA
U12 Branch Point Sequence:
CCATCCTAAATT
Flanking Amino Acid:
AQIDRKGFCEGDEICINADF
Intron Amino Acid Position:
192

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.2
0.71
1
69.2
36.8
Major BPS
72.7
0.57
1
72.1
31.1
Major PPT
81.1
0.7
0.7
73.3
31.6
Minor 5ss
30.3
-2.3
3.5
42
45
Minor BPS
61.6
0.44
1.7
72.09
45.3

Associated Gene:

Gene:
TXNIP
Ensembl Gene ID:
ENSAPLG00000005479
Chromosome:
PEDO01017650.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005679
3939 - 7922
3984