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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01017650.1_6804_7672_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6804 - 7672
Intron Length:
869

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGGCT
5'SS Class:
strong_major
3'SS Sequence:
CTTCTTTTCCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTAAT
U12 Branch Point Sequence:
CTTCACTTAATG
Flanking Amino Acid:
DVLTLEEQPTDEDGSVILRP
Intron Amino Acid Position:
84

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.9
75.6
33.8
Major BPS
78.2
0.7
1
77.9
32.1
Major PPT
86.4
0.82
0.7
79.8
32.1
Minor 5ss
26.4
-2.7
3.5
38.5
46.7
Minor BPS
62.6
0.26
1.6
65.84
42

Associated Gene:

Gene:
TXNIP
Ensembl Gene ID:
ENSAPLG00000005479
Chromosome:
PEDO01017650.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005679
3939 - 7922
3984