Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01017661.1_20034_20108_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

20034 - 20108

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGAGTGGG

5'SS Class:

strong_major

3'SS Sequence:

CTTTCCCTCTTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TACTTAC

U12 Branch Point Sequence:

AAGTACTTACTT

Flanking Amino Acid:

ALHSASPASKVVRPLKNFLQ

Intron Amino Acid Position:

460

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.92

0.8

72.2

39.5

Major BPS

73.7

0.59

0.9

63.6

35.1

Major PPT

0.65

0.7

77.5

24.4

Minor 5ss

26.6

-2.7

31.5

42.8

Minor BPS

0.17

1.8

68.49

42.5

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000002075

Chromosome:

PEDO01017661.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000041732

11735 - 30257

18523

ENSAPLT00000002111

11808 - 30257

18450