About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01017661.1_3455_3783_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3455 - 3783
Intron Length:
329

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATACTCA
5'SS Class:
major
3'SS Sequence:
ATTTTCCTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTATAT
U12 Branch Point Sequence:
TGTACCATAGAT
Flanking Amino Acid:
GETQEPPQSARRKPSYKRAV
Intron Amino Acid Position:
434

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72
0.52
1
63.6
37.2
Major BPS
70.4
0.51
1
67.1
39.4
Major PPT
87.5
0.84
0.7
81.9
29.3
Minor 5ss
49.6
-0
2.5
65.5
45.7
Minor BPS
48.8
-0
2
72.63
43.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002566
Chromosome:
PEDO01017661.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002652
2942 - 12246
9305