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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01017661.1_3836_4396_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3836 - 4396
Intron Length:
561

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAACTGCC
5'SS Class:
major
3'SS Sequence:
TGTTTTCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTGAA
U12 Branch Point Sequence:
AACTGTTGAATT
Flanking Amino Acid:
NEQPQEMNNNESNVNKNGET
Intron Amino Acid Position:
417

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.2
0.52
1.2
65.5
42
Major BPS
72
0.55
1.1
63.4
44.3
Major PPT
90.7
0.92
0.7
88.9
28.1
Minor 5ss
40
-1.1
3.2
54.3
42.9
Minor BPS
48.6
-0
1.8
63.93
41

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002566
Chromosome:
PEDO01017661.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002652
2942 - 12246
9305