Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01017719.1_3666_4433_R

Intron Information:

Intron Rank:

134895

Intron Class:

major

Intron Phase:

Intron Coordinates:

3666 - 4433

Intron Length:

768

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAGATGT

5'SS Class:

strong_major

3'SS Sequence:

CTCTGTGTGGCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GTGTCAC

U12 Branch Point Sequence:

GTCACTGCCACC

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

91.6

0.98

0.8

81.6

33.2

Major BPS

57.2

0.18

1.4

63.1

44.5

Major PPT

68.2

0.41

1.1

64.2

41.5

Minor 5ss

39.7

-1.2

3.1

56.6

47.5

Minor BPS

37.7

-0.9

2.3

47.47

42.2

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000019919

Chromosome:

PEDO01017719.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000045459

2452 - 5243

2792