Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01017756.1_4711_5133_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4711 - 5133

Intron Length:

423

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAGGTGG

5'SS Class:

strong_major

3'SS Sequence:

TTGCCCCTTGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GAGTAAT

U12 Branch Point Sequence:

CTAAGAGTAATG

Flanking Amino Acid:

EGINFSDDLGRCVIMVGMPY

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

87.7

0.89

0.9

70.4

42.5

Major BPS

58.9

0.22

1.4

61.7

43.1

Major PPT

79.8

0.67

0.8

73.5

31.4

Minor 5ss

36.1

-1.6

3.3

46.8

48.5

Minor BPS

-1.1

2.4

41.64

43.2

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000017878

Chromosome:

PEDO01017756.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000029156

3590 - 5171

1582