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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01017756.1_820_1083_F

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
820 - 1083
Intron Length:
264

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGCCGGGG
5'SS Class:
weak_major
3'SS Sequence:
TTTGCTGTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTCAT
U12 Branch Point Sequence:
CTCCTCTCATCT
Flanking Amino Acid:
EKKKQKEQEQVRATGQGGDL
Intron Amino Acid Position:
145

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
59.4
0.22
1.2
45.9
44.2
Major BPS
82.6
0.81
0.9
83.3
27.7
Major PPT
83.4
0.75
0.9
80.8
36.8
Minor 5ss
27.6
-2.6
3.6
37.8
47
Minor BPS
47.9
-0
1.8
64.89
45.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025261
Chromosome:
PEDO01017756.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030162
260 - 1766
1507