About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01017761.1_256_345_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
256 - 345
Intron Length:
90

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGGGTTTG
5'SS Class:
major
3'SS Sequence:
TCCTGTCCCGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTCAC
U12 Branch Point Sequence:
GGTTCCTCACCC
Flanking Amino Acid:
RCDPAQSPPVKFIELIGATQ
Intron Amino Acid Position:
142

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1
67.5
40.3
Major BPS
72.4
0.56
1
73.5
32.5
Major PPT
70.5
0.46
0.8
65.5
30.5
Minor 5ss
37.1
-1.5
3.2
45
44.5
Minor BPS
56.9
0.19
1.9
68.58
42.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021987
Chromosome:
PEDO01017761.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046389
100 - 2777
2678