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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01017773.1_1262_2613_R

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
1262 - 2613
Intron Length:
1352

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGGGC
5'SS Class:
strong_major
3'SS Sequence:
TAGCTGGGTGAAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
AAAAAAT
U12 Branch Point Sequence:
ACACACACAAAA
Flanking Amino Acid:
TWFQNRRTKWREINDWLCLR
Intron Amino Acid Position:
212

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
67.9
37.4
Major BPS
54
0.1
1
59.7
32.6
Major PPT
49.7
-0
1.2
48.4
43.8
Minor 5ss
24.1
-3
3.3
32
42.8
Minor BPS
39.1
-0.8
1.8
44.55
36.3

Associated Gene:

Gene:
TLX1
Ensembl Gene ID:
ENSAPLG00000023698
Chromosome:
PEDO01017773.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048501
1057 - 4893
3837