Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01017777.1_5809_6106_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5809 - 6106

Intron Length:

298

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTG|GTCAGTCCC

5'SS Class:

major

3'SS Sequence:

GTCTGCATTGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TACTCAC

U12 Branch Point Sequence:

TTCCCTTCTACT

Flanking Amino Acid:

RWTNGAAFNNWFEVRGGGPC

Intron Amino Acid Position:

162

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

71.1

0.5

1.3

62.4

42.4

Major BPS

77.2

0.68

0.8

77.6

26.2

Major PPT

73.6

0.53

66.2

39.5

Minor 5ss

-2.2

2.7

34.9

34.2

Minor BPS

51.6

0.13

1.9

73.84

42.9

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000023223

Chromosome:

PEDO01017777.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000040950

2405 - 6520

4116

ENSAPLT00000018032

3416 - 6520

3105