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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01017795.1_426_1652_F

Intron Information:

Intron Rank:
149547
Intron Class:
major
Intron Phase:
Intron Coordinates:
426 - 1652
Intron Length:
1227

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTAAC
5'SS Class:
strong_major
3'SS Sequence:
CCTTTATTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTTAA
U12 Branch Point Sequence:
TTCCCCTTTATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.2
0.88
0.9
84.2
26.3
Major BPS
65.6
0.39
0.9
55.7
32.1
Major PPT
82.7
0.74
0.7
81.1
29.7
Minor 5ss
37.7
-1.4
2.7
46.1
36.1
Minor BPS
66.9
0.61
1.6
81.58
40

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030475
Chromosome:
PEDO01017795.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025842
21 - 3041
3021