Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01017833.1_1182_1356_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1182 - 1356

Intron Length:

175

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTACGGGCG

5'SS Class:

major

3'SS Sequence:

GAATCCACCTCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

AATCCAC

U12 Branch Point Sequence:

CTCCCCACCACC

Flanking Amino Acid:

VEGALRAQREGFGRRMEDLD

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.1

0.66

1.1

62.3

41.3

Major BPS

50.8

0.02

1.2

62.2

34.6

Major PPT

61.2

0.25

56.1

39.4

Minor 5ss

28.5

-2.5

3.6

38.6

46.6

Minor BPS

42.3

-0.6

2.1

53.05

44.3

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000023311

Chromosome:

PEDO01017833.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000038630

21 - 3120

3100