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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01017833.1_2460_2528_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2460 - 2528
Intron Length:
69

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
CCCATCTCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCATCAA
U12 Branch Point Sequence:
AGGCCCCCATCT
Flanking Amino Acid:
LEDTETQLDVVLLCLQDLAA
Intron Amino Acid Position:
277

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.4
0.79
0.9
72.9
31.3
Major BPS
49.5
-0
1.3
53.9
41.5
Major PPT
70.7
0.47
0.8
64.5
30.7
Minor 5ss
27.7
-2.6
3
29.3
37
Minor BPS
42.5
-0.4
2
58.28
43.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023311
Chromosome:
PEDO01017833.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038630
21 - 3120
3100