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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01017851.1_444_3334_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
444 - 3334
Intron Length:
2891

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGGGC
5'SS Class:
strong_major
3'SS Sequence:
GCGGTCCCTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTGAT
U12 Branch Point Sequence:
GGGTGCTGATGT
Flanking Amino Acid:
MRSKKSVKEGLLLK
Intron Amino Acid Position:
5

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
67.9
37.4
Major BPS
76.2
0.65
1.1
65.3
43.7
Major PPT
66.7
0.38
1
58.4
38.4
Minor 5ss
24.1
-3
3.3
32
42.8
Minor BPS
40.1
-0.6
2.2
54.16
46.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018329
Chromosome:
PEDO01017851.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017215
21 - 4135
4115