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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01017852.1_499_575_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
499 - 575
Intron Length:
77

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTAAGCGCA
5'SS Class:
major
3'SS Sequence:
CCCTCTCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGAGCAT
U12 Branch Point Sequence:
CGGAGCTGAGCA
Flanking Amino Acid:
DAGWLADQSVRYPITLSRPG
Intron Amino Acid Position:
183

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.7
1
66.3
39.6
Major BPS
49.2
-0
1.5
59.7
46.7
Major PPT
74.1
0.54
0.7
68.4
25.2
Minor 5ss
37.1
-1.5
3.3
48.7
47
Minor BPS
40.6
-0.7
2
45.69
43.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019904
Chromosome:
PEDO01017852.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025030
6 - 1694
1689