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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01017857.1_32484_32591_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
32484 - 32591
Intron Length:
108

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCT|GTAGGTCAA
5'SS Class:
major
3'SS Sequence:
TTTTTTTTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAC
U12 Branch Point Sequence:
AAATTCTGACCC
Flanking Amino Acid:
AFAHIPSLQFLLLNSNKFTL
Intron Amino Acid Position:
95

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
64
0.33
1.2
58.4
42.3
Major BPS
81.4
0.78
0.9
71.3
36.7
Major PPT
99
1.1
0.4
96
13.8
Minor 5ss
35
-1.7
3.3
50
46.3
Minor BPS
49.6
-0
1.7
59.64
38.9

Associated Gene:

Gene:
LGI3
Ensembl Gene ID:
ENSAPLG00000014758
Chromosome:
PEDO01017857.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015374
31610 - 34485
2876