Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01017857.1_33584_33667_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

33584 - 33667

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CCG|GTAAGGTCG

5'SS Class:

major

3'SS Sequence:

CCCTGCCCCGCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

AATTGAC

U12 Branch Point Sequence:

CCCCCCAAAAAA

Flanking Amino Acid:

RKLRDFDRIPAHSAVHCKPI

Intron Amino Acid Position:

264

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

79.3

0.69

64.4

42.4

Major BPS

69.9

0.49

0.9

61.1

36.4

Major PPT

68.2

0.41

0.8

29.2

Minor 5ss

37.5

-1.4

3.2

48.8

46.9

Minor BPS

41.8

-0.6

1.9

46.53

42.9

Associated Gene:

Gene:

LGI3

Ensembl Gene ID:

ENSAPLG00000014758

Chromosome:

PEDO01017857.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000015374

31610 - 34485

2876