Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01017857.1_51550_51658_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

51550 - 51658

Intron Length:

109

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GCA|GTAAGTGCT

5'SS Class:

major

3'SS Sequence:

GTGCTCCCCGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ACCCCAC

U12 Branch Point Sequence:

GTGCGCGCACCC

Flanking Amino Acid:

QQLLGLVPGEQMEHATLFKG

Intron Amino Acid Position:

758

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.64

72.9

36.6

Major BPS

46.4

-0.2

1.2

52.1

34.1

Major PPT

69.1

0.43

0.9

62.3

34.7

Minor 5ss

37.5

-1.4

3.3

56.3

41.9

Minor BPS

34.6

-1.1

2.4

44.46

43.4

Associated Gene:

Gene:

FAM160B2

Ensembl Gene ID:

ENSAPLG00000025639

Chromosome:

PEDO01017857.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000030821

50919 - 57282

6364