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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01017857.1_51760_51867_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
51760 - 51867
Intron Length:
108

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAAGCCA
5'SS Class:
major
3'SS Sequence:
TCCCTGCGCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTCCAT
U12 Branch Point Sequence:
GGGGCCTGACCC
Flanking Amino Acid:
CRSLFSVLVRVIGELMQRIQ
Intron Amino Acid Position:
725

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69
0.45
1.1
56.5
42.4
Major BPS
64.7
0.37
1.3
74.7
40
Major PPT
65.1
0.34
1
56.7
38.7
Minor 5ss
29.9
-2.3
3.3
31
42.6
Minor BPS
46.3
-0.3
1.9
52.7
44.3

Associated Gene:

Gene:
FAM160B2
Ensembl Gene ID:
ENSAPLG00000025639
Chromosome:
PEDO01017857.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030821
50919 - 57282
6364