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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01017857.1_52648_52725_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
52648 - 52725
Intron Length:
78

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGGCTC
5'SS Class:
major
3'SS Sequence:
ACCTTTTTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTCCAC
U12 Branch Point Sequence:
CCCTCTCCACCT
Flanking Amino Acid:
GKGHVSEVVSSFLCLVPEEA
Intron Amino Acid Position:
599

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
68.9
38.9
Major BPS
54.8
0.12
1.3
66.4
39.9
Major PPT
84.2
0.77
0.8
76.4
37.1
Minor 5ss
33.9
-1.8
3.7
49.6
47
Minor BPS
42
-0.5
2
55.84
46.7

Associated Gene:

Gene:
FAM160B2
Ensembl Gene ID:
ENSAPLG00000025639
Chromosome:
PEDO01017857.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030821
50919 - 57282
6364