Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01017857.1_55968_56051_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

55968 - 56051

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ACG|GTGAGCGGG

5'SS Class:

major

3'SS Sequence:

CCGGTGTGCGCAG|C

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

CCCTGAC

U12 Branch Point Sequence:

GCGCCCCTGACC

Flanking Amino Acid:

GALLQQAVETREPSVDLLEA

Intron Amino Acid Position:

109

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

72.9

0.54

1.1

54.4

44.7

Major BPS

56.5

0.16

1.1

48.6

36.6

Major PPT

0.2

1.1

52.5

41.6

Minor 5ss

30.8

-2.2

3.3

38.2

46.7

Minor BPS

49.5

-0

1.7

41.6

Associated Gene:

Gene:

FAM160B2

Ensembl Gene ID:

ENSAPLG00000025639

Chromosome:

PEDO01017857.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000030821

50919 - 57282

6364