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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01017857.1_70570_70683_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
70570 - 70683
Intron Length:
114

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGAGTCCG
5'SS Class:
major
3'SS Sequence:
TCCCCTCGAGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
ATTTTTTTAATT
Flanking Amino Acid:
MSKRGKLVGKPNGKSKDCVF
Intron Amino Acid Position:
113

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.4
0.67
1
65.1
40.7
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
65.4
0.35
1
61.8
33.4
Minor 5ss
30.8
-2.2
2.8
34
34.7
Minor BPS
80.4
1.03
0.9
89.47
28.1

Associated Gene:

Gene:
FGF17
Ensembl Gene ID:
ENSAPLG00000004409
Chromosome:
PEDO01017857.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004519
70285 - 72806
2522