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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01017876.1_1394_2080_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1394 - 2080
Intron Length:
687

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTCGG
5'SS Class:
strong_major
3'SS Sequence:
CTCTCTTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCGAGAC
U12 Branch Point Sequence:
GCTGCCGAGACC
Flanking Amino Acid:
AVVGFVFRHEIKTNFESNLN
Intron Amino Acid Position:
118

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.9
68.8
43.8
Major BPS
41.8
-0.5
1.1
29.7
31.8
Major PPT
88
0.86
0.7
83.5
24.7
Minor 5ss
28.2
-2.5
2.7
32.3
42.2
Minor BPS
42.8
-0.5
2.3
53.74
44.7

Associated Gene:

Gene:
TSPAN6
Ensembl Gene ID:
ENSAPLG00000008734
Chromosome:
PEDO01017876.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009106
21 - 5621
5601