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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01017892.1_1373_4408_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1373 - 4408
Intron Length:
3036

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCTCG
5'SS Class:
strong_major
3'SS Sequence:
TCCCACCCCGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCCCAC
U12 Branch Point Sequence:
CCTCTCCCACCC
Flanking Amino Acid:
DCLDPRLLEELSGGQKRRQS
Intron Amino Acid Position:
463

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
0.9
68.4
39.3
Major BPS
50
0
1.2
61.8
35.9
Major PPT
68.5
0.42
0.8
61.5
28.6
Minor 5ss
38.7
-1.3
2.9
47.6
48
Minor BPS
40.2
-0.7
2
47.95
41.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029215
Chromosome:
PEDO01017892.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022191
21 - 6075
6055