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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01017892.1_15443_15544_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15443 - 15544
Intron Length:
102

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAGGAGGG
5'SS Class:
major
3'SS Sequence:
TCTCCGTCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTGGTAC
U12 Branch Point Sequence:
TCCCTGGTACGG
Flanking Amino Acid:
SYFLWFENELGYKLEVMEVP
Intron Amino Acid Position:
111

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.6
0.49
1.1
53.4
44
Major BPS
43.7
-0.3
1.4
38.5
41.4
Major PPT
73.8
0.54
0.8
65
36.3
Minor 5ss
28.6
-2.5
3.5
34.7
43.7
Minor BPS
29.1
-1.7
2.4
30.65
42

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023625
Chromosome:
PEDO01017892.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023511
14956 - 16000
1045